Coarse-grained simulation of DNA using LAMMPS
نویسندگان
چکیده
منابع مشابه
Coarse-Grained Simulation of DNA using LAMMPS
During the last decade coarse-grained nucleotide models have emerged that allow us to DNA and RNA on unprecedented time and length scales. Among them is oxDNA, a coarse-grained, sequence-specific model that captures the hybridisation transition of DNA and many structural properties of singleand double-stranded DNA. oxDNA was previously only available as standalone software, but has now been imp...
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The deoxyribonucleic acid is due to its biological importance, probably the most studied macromolecule. In this paper we focus on the computer simulation studies of DNA. First we present the two most widely used simulation methods; the Monte Carlo and the molecular dynamics method. Some tricks used in these simulations are also mentioned. The review on some applications of all atom and coarse-g...
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ژورنال
عنوان ژورنال: The European Physical Journal E
سال: 2018
ISSN: 1292-8941,1292-895X
DOI: 10.1140/epje/i2018-11669-8